Index

C

calculate_emd() (in module triku.tl._triku_functions) check_count_mat() (in module triku.utils._triku_tl_utils)

check_null_genes() (in module triku.utils._triku_tl_utils) compute_conv_idx() (in module triku.tl._triku_functions) compute_convolution_and_emd() (in module triku.tl._triku_functions)

E

emd_calculation() (in module triku.tl._triku_functions)

F

flush() (triku.genutils.TqdmToLogger method)

G

get_arr_counts() (in module triku.utils._triku_tl_utils) get_cutoff_curve() (in module triku.tl._triku_functions)

get_n_divisions() (in module triku.tl._triku_functions) getpbmc3k() (in module triku.test.test_args) (in module triku.test.test_units)

L

logger_handler (in module triku.logg)

M

module triku triku.genutils triku.logg triku.test triku.test.test_args triku.test.test_general_runs triku.test.test_imports triku.test.test_units triku.tl triku.tl._triku_functions triku.tl.triku triku.utils triku.utils._general_utils triku.utils._triku_tl_utils

R

return_arr_counts() (in module triku.utils._triku_tl_utils)

return_knn_array() (in module triku.tl._triku_functions) return_knn_expression() (in module triku.tl._triku_functions)

S

selected_markers (in module triku.test.test_general_runs)

set_level_logger() (in module triku.utils._general_utils) subtract_median() (in module triku.tl._triku_functions)

T

test_check_count_mat_negative() (in module triku.test.test_units) test_check_zero_counts() (in module triku.test.test_units) test_dist_conn() (in module triku.test.test_args) test_end() (in module triku.test.test_general_runs) test_import_triku() (in module triku.test.test_imports) test_n_divisions_check() (in module triku.test.test_args) test_n_features() (in module triku.test.test_args) test_names() (in module triku.test.test_args) test_run_defaults() (in module triku.test.test_general_runs) test_run_defaults_random() (in module triku.test.test_general_runs) test_s() (in module triku.test.test_args) test_triku_check_count_mat_20000_vars() (in module triku.test.test_units) test_triku_check_nonaccepted_type() (in module triku.test.test_units) test_triku_dense_sparse_matrices() (in module triku.test.test_units) test_triku_dense_sparse_matrices_raw() (in module triku.test.test_units) test_use_raw() (in module triku.test.test_args) TqdmToLogger (class in triku.genutils) triku module triku() (in module triku.tl.triku) triku.genutils module triku.logg module

triku.test module triku.test.test_args module triku.test.test_general_runs module triku.test.test_imports module triku.test.test_units module triku.tl module triku.tl._triku_functions module triku.tl.triku module triku.utils module triku.utils._general_utils module triku.utils._triku_tl_utils module TRIKU_LEVEL (in module triku.logg) triku_logger (in module triku.logg)

W

write() (triku.genutils.TqdmToLogger method)